STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ43962.1Bacterial luciferase family protein; [C] COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases. (328 aa)    
Predicted Functional Partners:
EDZ44425.1
Luciferase-like monooxygenase family; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.
   
 0.879
trmU
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
       0.778
EDZ41697.1
Luciferase-like monooxygenase superfamily; [C] COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.
 
  
 0.740
EDZ42191.1
NADPH:quinone oxidoreductase; [R] COG0431 Predicted flavoprotein.
  
 0.646
EDZ42721.1
Rhodanese domain protein; [P] COG0607 Rhodanese-related sulfurtransferase.
   
 
  0.638
EDZ43274.1
KR domain family; [Q] COG3321 Polyketide synthase modules and related proteins.
    
 0.627
EDZ42959.1
Dihydroorotate dehydrogenase family protein; [C] COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit.
    
 0.624
EDZ41409.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
       0.536
EDZ42005.1
Reductive dehalogenase subfamily, putative; [C] COG1600 Uncharacterized Fe-S protein.
  
 
 0.481
EDZ42304.1
Vanillate O-demethylase oxidoreductase; [C] COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
   
 
 0.475
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
Server load: low (20%) [ZH]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.