STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yaeTOuter membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (782 aa)    
Predicted Functional Partners:
comL
Competence lipoprotein ComL; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
 0.995
EDZ42696.1
PQQ enzyme repeat family protein; [S] COG1520 FOG: WD40-like repeat.
 
 0.987
EDZ41047.1
Lipoprotein, SmpA/OmlA family; [J] COG2913 Small protein A (tmRNA-binding).
  
 
 0.980
EDZ43048.1
Outer membrane chaperone Skp.
 
  
 0.970
rseP
RIP metalloprotease RseP; [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.
  
 0.968
lpxA
acyl-(acyl-carrier-protein)-UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
  
 0.965
fabZ
Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs.
 
  
 0.944
lpxD
[M] COG1044 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase.
 
  
 0.937
EDZ44393.1
Peptidyl-prolyl cis-trans isomerase SurA, putative; [O] COG0760 Parvulin-like peptidyl-prolyl isomerase.
 
 
 0.924
ybaU
Putative peptidyl-prolyl cis-trans isomerse; [O] COG0760 Parvulin-like peptidyl-prolyl isomerase.
 
 
 0.911
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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