Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EDZ42214.1 | EDZ43981.1 | RB2083_1729 | RB2083_3496 | Conserved hypothetical protein. | Conserved hypothetical protein TIGR00278; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.917 |
EDZ42214.1 | rsmJ | RB2083_1729 | RB2083_3745 | Conserved hypothetical protein. | Hypothetical protein; Specifically methylates the guanosine in position 1516 of 16S rRNA. | 0.431 |
EDZ43737.1 | rsmJ | RB2083_3252 | RB2083_3745 | Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. | Hypothetical protein; Specifically methylates the guanosine in position 1516 of 16S rRNA. | 0.705 |
EDZ43981.1 | EDZ42214.1 | RB2083_3496 | RB2083_1729 | Conserved hypothetical protein TIGR00278; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Conserved hypothetical protein. | 0.917 |
EDZ43981.1 | rnpA | RB2083_3496 | RB2083_3601 | Conserved hypothetical protein TIGR00278; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.985 |
EDZ43981.1 | rsmJ | RB2083_3496 | RB2083_3745 | Conserved hypothetical protein TIGR00278; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Hypothetical protein; Specifically methylates the guanosine in position 1516 of 16S rRNA. | 0.793 |
coaD | rsmJ | RB2083_3925 | RB2083_3745 | Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | Hypothetical protein; Specifically methylates the guanosine in position 1516 of 16S rRNA. | 0.811 |
dcp | rsmJ | RB2083_2516 | RB2083_3745 | Peptidyl-dipeptidase Dcp protein; [E] COG0339 Zn-dependent oligopeptidases. | Hypothetical protein; Specifically methylates the guanosine in position 1516 of 16S rRNA. | 0.494 |
rnpA | EDZ43981.1 | RB2083_3601 | RB2083_3496 | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | Conserved hypothetical protein TIGR00278; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.985 |
rnpA | rsmJ | RB2083_3601 | RB2083_3745 | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | Hypothetical protein; Specifically methylates the guanosine in position 1516 of 16S rRNA. | 0.431 |
rsmJ | EDZ42214.1 | RB2083_3745 | RB2083_1729 | Hypothetical protein; Specifically methylates the guanosine in position 1516 of 16S rRNA. | Conserved hypothetical protein. | 0.431 |
rsmJ | EDZ43737.1 | RB2083_3745 | RB2083_3252 | Hypothetical protein; Specifically methylates the guanosine in position 1516 of 16S rRNA. | Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. | 0.705 |
rsmJ | EDZ43981.1 | RB2083_3745 | RB2083_3496 | Hypothetical protein; Specifically methylates the guanosine in position 1516 of 16S rRNA. | Conserved hypothetical protein TIGR00278; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.793 |
rsmJ | coaD | RB2083_3745 | RB2083_3925 | Hypothetical protein; Specifically methylates the guanosine in position 1516 of 16S rRNA. | Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.811 |
rsmJ | dcp | RB2083_3745 | RB2083_2516 | Hypothetical protein; Specifically methylates the guanosine in position 1516 of 16S rRNA. | Peptidyl-dipeptidase Dcp protein; [E] COG0339 Zn-dependent oligopeptidases. | 0.494 |
rsmJ | rnpA | RB2083_3745 | RB2083_3601 | Hypothetical protein; Specifically methylates the guanosine in position 1516 of 16S rRNA. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.431 |