STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ44376.1Oxidoreductase; [R] COG0673 Predicted dehydrogenases and related proteins; overlaps another CDS with the same product name. (350 aa)    
Predicted Functional Partners:
EDZ42840.1
Oxidoreductase; [R] COG0673 Predicted dehydrogenases and related proteins; overlaps another CDS with the same product name.
 
     0.944
EDZ43241.1
Dehydrogenase; [R] COG0673 Predicted dehydrogenases and related proteins.
 
    
0.837
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
       0.773
iolD
[GHR] COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes; Belongs to the TPP enzyme family.
 
  
 0.735
EDZ42908.1
Myo-inositol catabolism IolB protein; [G] COG3718 Uncharacterized enzyme involved in inositol metabolism.
 
  
 0.727
uxaC
[G] COG1904 Glucuronate isomerase.
 
  
  0.716
EDZ44127.1
AP endonuclease, family 2; [G] COG1082 Sugar phosphate isomerases/epimerases.
 
 
  0.656
EDZ40672.1
Aminotransferase, DegT/DnrJ/EryC1/StrS family; [M] COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.600
EDZ41562.1
DegT/DnrJ/EryC1/StrS aminotransferase family; [M] COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.598
EDZ42592.1
Iole protein; [G] COG1082 Sugar phosphate isomerases/epimerases.
  
 
  0.595
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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