STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ44428.1Peptidase M23B; [D] COG4942 Membrane-bound metallopeptidase. (376 aa)    
Predicted Functional Partners:
EDZ42996.1
[D] COG2177 Cell division protein.
 
 
 
 0.992
ctpA
Peptidase family S41; [R] COG3975 Predicted protease with the C-terminal PDZ domain; Belongs to the peptidase S41A family.
  
  
 0.941
gpmI
2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
       0.852
EDZ42456.1
Peptidase, M48 family; [R] COG4783 Putative Zn-dependent protease, contains TPR repeats.
   
   0.808
EDZ43891.1
Peptidase, M48 family, putative; [O] COG0501 Zn-dependent protease with chaperone function.
   
   0.808
EDZ44323.1
Peptidase, M48 family; [R] COG4783 Putative Zn-dependent protease, contains TPR repeats.
   
   0.808
EDZ41301.1
Hypothetical protein.
   
   0.808
rlmH
Hypothetical protein; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
       0.742
rsfS
Iojap family protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
       0.733
EDZ42811.1
[M] COG0860 N-acetylmuramoyl-L-alanine amidase.
 
   
 0.711
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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