STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ40893.1TPR domain protein; [NU] COG3063 Tfp pilus assembly protein PilF. (195 aa)    
Predicted Functional Partners:
EDZ42417.1
Type II secretion system protein; [NU] COG2064 Flp pilus assembly protein TadC.
 
  
 0.959
EDZ44585.1
Response regulator receiver protein; [D] COG1192 ATPases involved in chromosome partitioning.
 
  
 0.954
EDZ43601.1
Hypothetical protein.
 
     0.937
EDZ44130.1
Type II/IV secretion system protein, TadC subfamily; [NU] COG2064 Flp pilus assembly protein TadC.
 
  
 0.932
EDZ44542.1
Peptidase A24A, prepilin type IV; [OU] COG4960 Flp pilus assembly protein, protease CpaA.
 
   
 0.917
EDZ44543.1
Bacterial type II/III secretion system protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; Belongs to the bacterial secretin family.
 
  
 0.882
EDZ43085.1
Type II/IV secretion system protein, TadA subfamily; [NU] COG5008 Tfp pilus assembly protein, ATPase PilU.
 
  
 0.875
EDZ41435.1
AAA ATPase; [O] COG0606 Predicted ATPase with chaperone activity.
 
     0.868
cpaB
[U] COG3745 Flp pilus assembly protein CpaB.
 
  
 0.852
EDZ43969.1
OmpA family protein; [M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
 
     0.834
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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