STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ41093.1VacJ family lipoprotein; [M] COG2853 Surface lipoprotein. (264 aa)    
Predicted Functional Partners:
ttg2D
Toluene tolerance protein Ttg2D; [Q] COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component.
 
 
 
 0.975
EDZ43305.1
Outer membrane porin; [Q] COG2931 RTX toxins and related Ca2+-binding proteins.
 
 
 
 0.965
EDZ41421.1
Toluene transport system Ttg2C protein; [Q] COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component.
 
   
 0.846
EDZ42936.1
ABC transporter, ATP-binding protein; [E] COG1126 ABC-type polar amino acid transport system, ATPase component.
 
   
 0.805
EDZ43480.1
Membrane protein; [Q] COG0767 ABC-type transport system involved in resistance to organic solvents, permease component.
 
   
 0.788
EDZ41388.1
MotA/TolQ/ExbB proton channel family; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
   
    0.565
EDZ41396.1
Hypothetical protein; [C] COG2218 Formylmethanofuran dehydrogenase subunit C; Conserved region in glutamate synthase family.
       0.541
EDZ44439.1
Transglycosylase, Slt family; [M] COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains).
       0.479
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
 
   
 0.426
fur
[P] COG0735 Fe2+/Zn2+ uptake regulation proteins; Belongs to the Fur family.
   
    0.408
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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