STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ41117.1Short-chain dehydrogenase/reductase family member; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases). (243 aa)    
Predicted Functional Partners:
EDZ42495.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
    0.984
EDZ42898.1
[S] COG3496 Uncharacterized conserved protein.
 
  
 0.971
EDZ41119.1
FAD dependent oxidoreductase; [R] COG2907 Predicted NAD/FAD-binding protein.
 
   
 0.964
EDZ43115.1
Sodium:galactoside symporter family protein; [G] COG2211 Na+/melibiose symporter and related transporters.
 
    0.954
chrR
[T] COG3806 Anti-sigma factor.
 
   
 0.921
rpoE
RpoE; [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.822
EDZ43274.1
KR domain family; [Q] COG3321 Polyketide synthase modules and related proteins.
  
 0.820
EDZ41396.1
Hypothetical protein; [C] COG2218 Formylmethanofuran dehydrogenase subunit C; Conserved region in glutamate synthase family.
    
  0.717
gno_2
Short-chain dehydrogenase/reductase; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
 
  0.657
cfa
Cyclopropane-fatty-acyl-phospholipid synthase; [H] COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase.
 
     0.649
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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