STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
degSSensor protein DegS; [T] COG4585 Signal transduction histidine kinase. (480 aa)    
Predicted Functional Partners:
EDZ44195.1
DNA-binding response regulator, LuxR family; [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
  
  0.951
EDZ42768.1
Aerobic respiration control sensor protein ArcB, putative; [T] COG0642 Signal transduction histidine kinase.
    
 0.928
EDZ43828.1
Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.
    
 0.905
EDZ44175.1
[T] COG0642 Signal transduction histidine kinase.
    
 0.813
EDZ42801.1
Sensor histidine kinase/response regulator; [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
    
 0.798
EDZ42942.1
Sensory box sensor histidine kinase/response regulator; [T] COG0784 FOG: CheY-like receiver.
    
 0.798
EDZ43110.1
Sensory box sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.
    
 0.798
EDZ44142.1
Multisensor hybrid histidine kinase, putative; [T] COG0642 Signal transduction histidine kinase.
    
 0.798
EDZ44253.1
Sensory box sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.
    
 0.798
EDZ44333.1
Sensory box sensor histidine kinase/response regulator.
    
 0.798
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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