STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB2083_89HhH-GPD; [L] COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase. (209 aa)    
Predicted Functional Partners:
EDZ41573.1
[L] COG0350 Methylated DNA-protein cysteine methyltransferase.
 
 
 0.980
EDZ44079.1
Phospholipase/carboxylesterase family protein; [Q] COG3509 Poly(3-hydroxybutyrate) depolymerase.
    
 0.964
xth_2
[L] COG0708 Exonuclease III.
  
 0.861
xth_1
[L] COG0708 Exonuclease III.
  
 0.861
cobK
[H] COG2099 Precorrin-6x reductase.
       0.852
cbiD
Cobalamin biosynthesis protein CbiD; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A.
       0.852
EDZ41079.1
[GEPR] COG0477 Permeases of the major facilitator superfamily.
     
 0.821
EDZ42547.1
Transcriptional regulator, AraC family; [L] COG3695 Predicted methylated DNA-protein cysteine methyltransferase.
 
 
 0.742
polA
DNA polymerase I superfamily; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.711
dinP
DNA damage inducible P protein; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
  
 
 0.668
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.