STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ12179.1Lincomycin resistance protein lmrb; COG0477 Permeases of the major facilitator superfamily. (492 aa)    
Predicted Functional Partners:
EAQ14476.1
Efflux transporter, RND family, MFP subunit; COG0845 Membrane-fusion protein.
  
 0.878
EAQ14819.1
COG1538 Outer membrane protein.
  
 
 0.627
EAQ12281.1
Multidrug efflux pump, Major Facilitator Superfamily protein (MFS); COG0477 Permeases of the major facilitator superfamily.
  
   
 0.509
EAQ11208.1
Coenzyme a synthetase-like protein; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
  
 
 0.490
EAQ12180.1
Hypothetical protein.
       0.460
EAQ11891.1
Fatty acid synthase transmembrane protein; COG3321 Polyketide synthase modules and related proteins.
    
 0.443
EAQ10988.1
COG1538 Outer membrane protein.
  
 
 0.435
EAQ13449.1
Hypothetical protein; COG1257 Hydroxymethylglutaryl-CoA reductase.
   
 0.433
EAQ13293.1
iron(III) dicitrate ABC transporter (lipoprotein); COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component.
     0.429
EAQ12954.1
Type I secretion membrane fusion protein, HlyD family protein; COG0845 Membrane-fusion protein.
   
 0.418
Your Current Organism:
Maritimibacter alkaliphilus
NCBI taxonomy Id: 314271
Other names: M. alkaliphilus HTCC2654, Maritimibacter alkaliphilus HTCC2654, Maritimibacter alkaliphilus str. HTCC2654, Maritimibacter alkaliphilus strain HTCC2654, Rhodobacterales bacterium HTCC2654
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