STRINGSTRING
rsmI protein (Maritimibacter alkaliphilus) - STRING interaction network
"rsmI" - rRNA in Maritimibacter alkaliphilus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsmIrRNA (cytidine-2’-O-)-methyltransferase RsmI ; Catalyzes the 2’-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA (284 aa)    
Predicted Functional Partners:
RB2654_08932
Uncharacterized protein (116 aa)
              0.880
gshB
Glutathione synthase (313 aa)
              0.768
RB2654_08942
Uncharacterized protein (388 aa)
 
          0.747
RB2654_08952
Putative lipid II flippase MurJ ; Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane (513 aa)
              0.712
RB2654_08922
Lipolytic enzyme (301 aa)
   
        0.685
RB2654_10174
DNA polymerase III subunits gamma and tau (576 aa)
 
        0.667
glnD
Bifunctional nitrogen sensor protein ; Adenylation and deadenylation of glutamate--ammonia ligase (927 aa)
              0.663
rsmG
16S rRNA 7-methylguanosine methyltransferase ; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA (206 aa)
 
   
  0.661
rsmH
rRNA (cytosine-N(4)-)-methyltransferase RsmH ; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA (330 aa)
 
   
  0.643
rimM
Ribosome maturation factor RimM ; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes (170 aa)
 
   
  0.626
Your Current Organism:
Maritimibacter alkaliphilus
NCBI taxonomy Id: 314271
Other names: M. alkaliphilus, M. alkaliphilus HTCC2654, Maritimibacter, Maritimibacter Lee et al. 2007, Maritimibacter alkaliphilus, Maritimibacter alkaliphilus HTCC2654, Maritimibacter alkaliphilus Lee et al. 2007, Maritimibacter alkaliphilus str. HTCC2654, Maritimibacter alkaliphilus strain HTCC2654, Rhodobacterales bacterium HTCC2654
Server load: low (11%) [HD]