STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ13905.1Carboxyl-terminal protease family protein; COG0793 Periplasmic protease; Belongs to the peptidase S41A family. (445 aa)    
Predicted Functional Partners:
rppH
Hydrolase, NUDIX family, NudH subfamily protein; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily.
    
 0.952
EAQ10620.1
TPR domain protein; COG0457 FOG: TPR repeat.
    
 
 0.927
EAQ13906.1
Hypothetical protein; COG4942 Membrane-bound metallopeptidase.
  
  
 0.886
EAQ13903.1
Hypothetical protein.
       0.781
secD
Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
 
 
  0.721
gpmI
Phosphoglyceromutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
     
 0.720
EAQ11179.1
COG0460 Homoserine dehydrogenase.
 
  
  0.684
EAQ12192.1
COG0287 Prephenate dehydrogenase.
  
  
  0.651
EAQ11992.1
Hypothetical protein.
   
  0.647
EAQ12052.1
Type I secretion target repeat protein; COG2931 RTX toxins and related Ca2+-binding proteins.
   
  0.647
Your Current Organism:
Maritimibacter alkaliphilus
NCBI taxonomy Id: 314271
Other names: M. alkaliphilus HTCC2654, Maritimibacter alkaliphilus HTCC2654, Maritimibacter alkaliphilus str. HTCC2654, Maritimibacter alkaliphilus strain HTCC2654, Rhodobacterales bacterium HTCC2654
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