STRINGSTRING
rlmH protein (Maritimibacter alkaliphilus) - STRING interaction network
"rlmH" - rRNA in Maritimibacter alkaliphilus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rlmHrRNA (pseudouridine-N3-)-methyltransferase RlmH ; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA (156 aa)    
Predicted Functional Partners:
rsfS
Ribosomal silencing factor RsfS ; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation (122 aa)
   
   
  0.939
prmA
Ribosomal protein L11 methyltransferase ; Methylates ribosomal protein L11 (293 aa)
 
     
  0.750
rnr
Ribonuclease R ; 3’-5’ exoribonuclease that releases 5’-nucleoside monophosphates and is involved in maturation of structured RNAs (751 aa)
 
     
  0.608
rplU
50S ribosomal protein L21 ; This protein binds to 23S rRNA in the presence of protein L20 (208 aa)
 
     
  0.591
RB2654_12604
Mechanosensitive ion channel family protein (480 aa)
   
        0.572
engB
Probable GTP-binding protein EngB ; Necessary for normal cell division and for the maintenance of normal septation (218 aa)
 
   
  0.565
RB2654_18493
Penicillin-binding protein 2 (647 aa)
   
        0.564
dusA
tRNA-dihydrouridine synthase A ; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs (313 aa)
 
        0.560
RB2654_12569
Carboxyl-terminal protease family protein (445 aa)
 
        0.543
RB2654_10978
ATPase, AAA family protein (436 aa)
   
        0.540
Your Current Organism:
Maritimibacter alkaliphilus
NCBI taxonomy Id: 314271
Other names: M. alkaliphilus, M. alkaliphilus HTCC2654, Maritimibacter, Maritimibacter Lee et al. 2007, Maritimibacter alkaliphilus, Maritimibacter alkaliphilus HTCC2654, Maritimibacter alkaliphilus Lee et al. 2007, Maritimibacter alkaliphilus str. HTCC2654, Maritimibacter alkaliphilus strain HTCC2654, Rhodobacterales bacterium HTCC2654
Server load: low (7%) [HD]