Genes that are sometimes fused into single open reading frames.
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
30S ribosomal protein S20 ; Binds directly to 16S ribosomal RNA (87 aa)
Predicted Functional Partners:
50S ribosomal protein L10 ; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors (162 aa)
30S ribosomal protein S15 ; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome (89 aa)
30S ribosomal protein S16 (130 aa)
30S ribosomal protein S10 ; Involved in the binding of tRNA to the ribosomes (104 aa)
30S ribosomal protein S9 (164 aa)
30S ribosomal protein S2 (228 aa)
30S ribosomal protein S4 ; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit (206 aa)
30S ribosomal protein S14 ; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site (96 aa)
30S ribosomal protein S17 ; One of the primary rRNA binding proteins, it binds specifically to the 5’-end of 16S ribosomal RNA (76 aa)
30S ribosomal protein S18 ; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit (75 aa)
Your Current Organism:
NCBI taxonomy Id: 314271 Other names: M. alkaliphilus, M. alkaliphilus HTCC2654, Maritimibacter, Maritimibacter Lee et al. 2007, Maritimibacter alkaliphilus, Maritimibacter alkaliphilus HTCC2654, Maritimibacter alkaliphilus Lee et al. 2007, Maritimibacter alkaliphilus str. HTCC2654, Maritimibacter alkaliphilus strain HTCC2654, Rhodobacterales bacterium HTCC2654