Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EAQ11165.1 | EAQ11166.1 | RB2654_21233 | RB2654_21238 | Putative P4-family integrase; COG0582 Integrase; Belongs to the 'phage' integrase family. | Hypothetical protein; COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit. | 0.605 |
EAQ11165.1 | EAQ11167.1 | RB2654_21233 | RB2654_21243 | Putative P4-family integrase; COG0582 Integrase; Belongs to the 'phage' integrase family. | DNA-binding protein, putative; COG3311 Predicted transcriptional regulator. | 0.816 |
EAQ11165.1 | guaA | RB2654_21233 | RB2654_03554 | Putative P4-family integrase; COG0582 Integrase; Belongs to the 'phage' integrase family. | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | 0.418 |
EAQ11166.1 | EAQ11165.1 | RB2654_21238 | RB2654_21233 | Hypothetical protein; COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit. | Putative P4-family integrase; COG0582 Integrase; Belongs to the 'phage' integrase family. | 0.605 |
EAQ11166.1 | EAQ11167.1 | RB2654_21238 | RB2654_21243 | Hypothetical protein; COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit. | DNA-binding protein, putative; COG3311 Predicted transcriptional regulator. | 0.529 |
EAQ11167.1 | EAQ11165.1 | RB2654_21243 | RB2654_21233 | DNA-binding protein, putative; COG3311 Predicted transcriptional regulator. | Putative P4-family integrase; COG0582 Integrase; Belongs to the 'phage' integrase family. | 0.816 |
EAQ11167.1 | EAQ11166.1 | RB2654_21243 | RB2654_21238 | DNA-binding protein, putative; COG3311 Predicted transcriptional regulator. | Hypothetical protein; COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit. | 0.529 |
guaA | EAQ11165.1 | RB2654_03554 | RB2654_21233 | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | Putative P4-family integrase; COG0582 Integrase; Belongs to the 'phage' integrase family. | 0.418 |