STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMJ82032.1Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology. (1230 aa)    
Predicted Functional Partners:
AMJ82031.1
Conjugal transfer protein TraU; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.957
AMJ82030.1
Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.952
AMJ84670.1
S26 family signal peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.949
AMJ82028.1
Conjugal transfer protein TraC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.908
AMJ82027.1
Disulfide isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.897
AMJ82054.1
Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.808
AV941_05845
Conjugal transfer protein TraB; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.800
AMJ82055.1
Conjugal transfer protein TraH; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.800
AMJ82009.1
Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.798
AMJ82056.1
Conjugal transfer protein TraG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.796
Your Current Organism:
Alteromonas mediterranea
NCBI taxonomy Id: 314275
Other names: A. mediterranea, Alteromonas mediterranea Ivanova et al. 2015, CIP 110805, DSM 17117, LMG 28347, LMG:28347, strain DE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.