STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMJ83539.1NADH oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (374 aa)    
Predicted Functional Partners:
AMJ83144.1
Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.673
AMJ83540.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.615
AMJ84414.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.587
AMJ83056.1
Saccharopine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.483
AMJ82585.1
Haloalkane dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.449
AMJ82445.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.436
Your Current Organism:
Alteromonas mediterranea
NCBI taxonomy Id: 314275
Other names: A. mediterranea, Alteromonas mediterranea Ivanova et al. 2015, CIP 110805, DSM 17117, LMG 28347, LMG:28347, strain DE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.