Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
EAQ30950.130S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. (311 aa)    
Predicted Functional Partners:
rpsB
COG0052 Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
 
 0.992
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
   
 0.988
rpsC
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
 
 0.987
EAQ32393.1
COG0539 Ribosomal protein S1.
     0.986
EAQ31002.1
COG0522 Ribosomal protein S4 and related proteins.
   
 0.985
EAQ31001.1
COG0100 Ribosomal protein S11.
   
 0.984
EAQ31376.1
COG0049 Ribosomal protein S7.
   
 0.983
EAQ30992.1
COG0096 Ribosomal protein S8.
   
 0.982
EAQ31377.1
COG0048 Ribosomal protein S12.
   
 0.978
EAQ30791.1
COG0088 Ribosomal protein L4.
  
 0.978
Your Current Organism:
Idiomarina baltica
NCBI taxonomy Id: 314276
Other names: I. baltica OS145, Idiomarina baltica OS145, Idiomarina baltica str. OS145, Idiomarina baltica strain OS145
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