Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EAQ32405.1Helicase, ATP-dependent; COG1643 HrpA-like helicases. (1314 aa)    
Predicted Functional Partners:
EAQ32406.1
Asparaginase family protein; COG1446 Asparaginase.
       0.825
EAQ30995.1
COG0098 Ribosomal protein S5.
   
  0.818
EAQ31002.1
COG0522 Ribosomal protein S4 and related proteins.
   
  0.813
EAQ31292.1
COG1444 Predicted P-loop ATPase fused to an acetyltransferase.
  
   0.788
EAQ31001.1
COG0100 Ribosomal protein S11.
    
  0.788
rpsO
Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
    
  0.785
rpsQ
Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
  0.759
EAQ30992.1
COG0096 Ribosomal protein S8.
    
  0.755
EAQ31375.1
COG0480 Translation elongation factors (GTPases).
   
 
 0.754
EAQ31376.1
COG0049 Ribosomal protein S7.
    
  0.753
Your Current Organism:
Idiomarina baltica
NCBI taxonomy Id: 314276
Other names: I. baltica OS145, Idiomarina baltica OS145, Idiomarina baltica str. OS145, Idiomarina baltica strain OS145
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