Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ32429.1COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog. (193 aa)    
Predicted Functional Partners:
EAQ32430.1
Transcription negative regulator ChrR; COG3806 Anti-sigma factor.
 
 
 0.983
EAQ31162.1
COG3073 Negative regulator of sigma E activity.
 
 
 0.862
EAQ32428.1
COG2802 Uncharacterized protein, similar to the N-terminal domain of Lon protease.
 
   
 0.755
EAQ31379.1
COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit.
    
 
 0.725
EAQ31378.1
COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit.
    
 
 0.718
EAQ30867.1
COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.714
EAQ32422.1
Hypothetical protein.
 
     0.710
EAQ32327.1
RNA polymerase sigma factor, sigma-70 family protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.704
EAQ31003.1
COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit.
    
 
 0.703
EAQ32423.1
COG2907 Predicted NAD/FAD-binding protein.
 
    0.668
Your Current Organism:
Idiomarina baltica
NCBI taxonomy Id: 314276
Other names: I. baltica OS145, Idiomarina baltica OS145, Idiomarina baltica str. OS145, Idiomarina baltica strain OS145
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