STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ32446.1Probable transmembrane protein; COG1715 Restriction endonuclease. (280 aa)    
Predicted Functional Partners:
prpF
Conserved protein related to proline racemase; COG2828 Uncharacterized protein conserved in bacteria.
   
    0.757
EAQ33338.1
DNA polymerase I; COG0258 5'-3' exonuclease (including N-terminal domain of PolI).
     
 0.524
EAQ31377.1
COG0048 Ribosomal protein S12.
   
  
 0.472
EAQ31379.1
COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit.
    
 
 0.465
EAQ31378.1
COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit.
    
 
 0.463
EAQ32558.1
Putative ATP-dependent helicase; COG3886 Predicted HKD family nuclease.
       0.461
leuS
COG0495 Leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 
 0.449
EAQ32830.1
Putative type I site-specific deoxyribonuclease LldI chain protein; COG0286 Type I restriction-modification system methyltransferase subunit.
  
  
 0.448
EAQ32304.1
COG0286 Type I restriction-modification system methyltransferase subunit.
  
  
 0.448
EAQ32569.1
N-6 DNA methylase; COG0286 Type I restriction-modification system methyltransferase subunit.
  
  
 0.448
Your Current Organism:
Idiomarina baltica
NCBI taxonomy Id: 314276
Other names: I. baltica OS145, Idiomarina baltica OS145, Idiomarina baltica str. OS145, Idiomarina baltica strain OS145
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