STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ32479.1Transcriptional regulator, GntR family protein; COG1802 Transcriptional regulators. (227 aa)    
Predicted Functional Partners:
prpB
Carboxyphosphonoenolpyruvate phosphonomutase; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate. Belongs to the isocitrate lyase/PEP mutase superfamily. Methylisocitrate lyase family.
 
  
 0.911
prpF
Conserved protein related to proline racemase; COG2828 Uncharacterized protein conserved in bacteria.
 
  
 0.821
EAQ32476.1
COG1048 Aconitase A.
 
  
 0.752
EAQ32477.1
COG0372 Citrate synthase.
  
  
 0.700
prmB
Modification methylase, HemK family protein; Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue; Belongs to the protein N5-glutamine methyltransferase family. PrmB subfamily.
    
   0.616
EAQ32480.1
COG0861 Membrane protein TerC, possibly involved in tellurium resistance.
       0.519
EAQ33060.1
GntP family permease; COG2610 H+/gluconate symporter and related permeases.
 
  
 0.493
EAQ32472.1
Hypothetical protein; COG1196 Chromosome segregation ATPases.
 
     0.453
EAQ32473.1
Hypothetical protein; COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit.
 
     0.436
EAQ32474.1
Hypothetical protein; COG1196 Chromosome segregation ATPases.
 
     0.431
Your Current Organism:
Idiomarina baltica
NCBI taxonomy Id: 314276
Other names: I. baltica OS145, Idiomarina baltica OS145, Idiomarina baltica str. OS145, Idiomarina baltica strain OS145
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.