Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ32508.1COG1876 D-alanyl-D-alanine carboxypeptidase. (230 aa)    
Predicted Functional Partners:
EAQ32505.1
PTS system, glucose-specific IIA component; COG2190 Phosphotransferase system IIA components.
       0.871
EAQ32506.1
Glutaredoxin family protein; COG1393 Arsenate reductase and related proteins, glutaredoxin family; Belongs to the ArsC family.
       0.825
dapE
Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.
       0.825
EAQ32509.1
Phosphoribosylaminoimidazole-succinocarboxamide synthase.
       0.775
EAQ31130.1
COG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
     
 0.609
ftsI
Cell division protein FtsI; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum.
     
 0.561
mrdA
Cell division protein FtsI; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.
     
 0.561
EAQ32623.1
Peptidoglycan synthetase; COG5009 Membrane carboxypeptidase/penicillin-binding protein.
     
  0.545
EAQ32504.1
COG3092 Uncharacterized protein conserved in bacteria.
       0.477
EAQ32366.1
Peptidoglycan synthetase; COG0744 Membrane carboxypeptidase (penicillin-binding protein).
     
 0.453
Your Current Organism:
Idiomarina baltica
NCBI taxonomy Id: 314276
Other names: I. baltica OS145, Idiomarina baltica OS145, Idiomarina baltica str. OS145, Idiomarina baltica strain OS145
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