Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ32797.1Uncharacterized conserved domain often associated with AraC-type DNA-binding domain; COG2207 AraC-type DNA-binding domain-containing proteins. (334 aa)    
Predicted Functional Partners:
EAQ32796.1
Signaling protein with membrane-bound sensor domain and GGDEF domain; COG2199 FOG: GGDEF domain.
 
     0.861
EAQ30917.1
Glutamate synthase, large subunit; COG0067 Glutamate synthase domain 1.
    
 0.859
EAQ32795.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
     0.727
EAQ31003.1
COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit.
    
 
 0.700
EAQ32794.1
COG4247 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase).
 
     0.635
EAQ31453.1
COG0108 3,4-dihydroxy-2-butanone 4-phosphate synthase.
    
  0.597
EAQ31678.1
COG5016 Pyruvate/oxaloacetate carboxyltransferase.
     
  0.561
EAQ31379.1
COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit.
    
   0.429
rpoD
DNA-directed RNA polymerase sigma 70 subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
   0.429
flgM
COG2747 Negative regulator of flagellin synthesis (anti-sigma28 factor).
  
     0.427
Your Current Organism:
Idiomarina baltica
NCBI taxonomy Id: 314276
Other names: I. baltica OS145, Idiomarina baltica OS145, Idiomarina baltica str. OS145, Idiomarina baltica strain OS145
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