Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ33096.1GTPase, HflX; COG2262 GTPases. (412 aa)    
Predicted Functional Partners:
hflK
Membrane protease, stomatin/prohibitin family protein; HflC and HflK could encode or regulate a protease.
  
  
 0.973
EAQ33094.1
Membrane protease, stomatin/prohibitin family protein; HflC and HflK could regulate a protease.
  
  
 0.917
EAQ30868.1
COG0359 Ribosomal protein L9.
 
 
 
 0.898
EAQ30994.1
COG0256 Ribosomal protein L18.
  
 
   0.887
miaA
tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
  
  
 0.886
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
    
 
 0.879
EAQ31383.1
COG0080 Ribosomal protein L11.
    
 
 0.873
hfq
Host factor I-like protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.
  
  
 0.871
EAQ30790.1
COG0087 Ribosomal protein L3.
    
 
 0.867
EAQ30976.1
COG0091 Ribosomal protein L22.
    
 
 0.867
Your Current Organism:
Idiomarina baltica
NCBI taxonomy Id: 314276
Other names: I. baltica OS145, Idiomarina baltica OS145, Idiomarina baltica str. OS145, Idiomarina baltica strain OS145
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