Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EAQ32431.1 | dksA | OS145_00475 | OS145_07976 | Bacterial nucleoid DNA-binding protein, IHF alpha subunit; COG0776 Bacterial nucleoid DNA-binding protein. | DnaK; COG1734 DnaK suppressor protein. | 0.446 |
| EAQ32431.1 | hfq | OS145_00475 | OS145_01975 | Bacterial nucleoid DNA-binding protein, IHF alpha subunit; COG0776 Bacterial nucleoid DNA-binding protein. | Host factor I-like protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.789 |
| EAQ32502.1 | hfq | OS145_00830 | OS145_01975 | COG0708 Exonuclease III. | Host factor I-like protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.911 |
| EAQ32781.1 | hfq | OS145_01442 | OS145_01975 | COG0753 Catalase. | Host factor I-like protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.905 |
| EAQ33096.1 | EAQ33102.1 | OS145_01970 | OS145_02000 | GTPase, HflX; COG2262 GTPases. | C-terminal predicted sugar kinase fused to N-terminal uncharaterized domain. | 0.724 |
| EAQ33096.1 | hfq | OS145_01970 | OS145_01975 | GTPase, HflX; COG2262 GTPases. | Host factor I-like protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.778 |
| EAQ33096.1 | miaA | OS145_01970 | OS145_01980 | GTPase, HflX; COG2262 GTPases. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.799 |
| EAQ33102.1 | EAQ33096.1 | OS145_02000 | OS145_01970 | C-terminal predicted sugar kinase fused to N-terminal uncharaterized domain. | GTPase, HflX; COG2262 GTPases. | 0.724 |
| EAQ33102.1 | hfq | OS145_02000 | OS145_01975 | C-terminal predicted sugar kinase fused to N-terminal uncharaterized domain. | Host factor I-like protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.633 |
| EAQ33102.1 | miaA | OS145_02000 | OS145_01980 | C-terminal predicted sugar kinase fused to N-terminal uncharaterized domain. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.908 |
| clpX | hfq | OS145_12230 | OS145_01975 | COG1219 ATP-dependent protease Clp, ATPase subunit. | Host factor I-like protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.736 |
| dksA | EAQ32431.1 | OS145_07976 | OS145_00475 | DnaK; COG1734 DnaK suppressor protein. | Bacterial nucleoid DNA-binding protein, IHF alpha subunit; COG0776 Bacterial nucleoid DNA-binding protein. | 0.446 |
| dksA | hfq | OS145_07976 | OS145_01975 | DnaK; COG1734 DnaK suppressor protein. | Host factor I-like protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.739 |
| dksA | pcnB | OS145_07976 | OS145_07986 | DnaK; COG1734 DnaK suppressor protein. | Poly(A) polymerase; Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control. Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | 0.587 |
| hfq | EAQ32431.1 | OS145_01975 | OS145_00475 | Host factor I-like protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | Bacterial nucleoid DNA-binding protein, IHF alpha subunit; COG0776 Bacterial nucleoid DNA-binding protein. | 0.789 |
| hfq | EAQ32502.1 | OS145_01975 | OS145_00830 | Host factor I-like protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | COG0708 Exonuclease III. | 0.911 |
| hfq | EAQ32781.1 | OS145_01975 | OS145_01442 | Host factor I-like protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | COG0753 Catalase. | 0.905 |
| hfq | EAQ33096.1 | OS145_01975 | OS145_01970 | Host factor I-like protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | GTPase, HflX; COG2262 GTPases. | 0.778 |
| hfq | EAQ33102.1 | OS145_01975 | OS145_02000 | Host factor I-like protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | C-terminal predicted sugar kinase fused to N-terminal uncharaterized domain. | 0.633 |
| hfq | clpX | OS145_01975 | OS145_12230 | Host factor I-like protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | COG1219 ATP-dependent protease Clp, ATPase subunit. | 0.736 |
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