Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
hemNCOG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases; Belongs to the anaerobic coproporphyrinogen-III oxidase family. (451 aa)    
Predicted Functional Partners:
EAQ32210.1
COG0407 Uroporphyrinogen-III decarboxylase.
 
 
 0.976
EAQ33341.1
COG0408 Coproporphyrinogen III oxidase.
    
 0.960
hemJ
COG1981 Predicted membrane protein.
    
 0.919
EAQ33241.1
COG3047 Outer membrane protein W.
 
  
 0.864
ccoN
COG3278 Cbb3-type cytochrome oxidase, subunit 1; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.798
ccoO
COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit.
 
  
 0.782
EAQ31508.1
Iron-sulfur cluster-binding protein; COG0348 Polyferredoxin.
 
  
 0.751
EAQ33236.1
Anaerobic regulatory protein; COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.
  
  
 0.705
EAQ33234.1
COG2832 Uncharacterized protein conserved in bacteria.
 
     0.636
EAQ32677.1
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
 
  
 0.614
Your Current Organism:
Idiomarina baltica
NCBI taxonomy Id: 314276
Other names: I. baltica OS145, Idiomarina baltica OS145, Idiomarina baltica str. OS145, Idiomarina baltica strain OS145
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