Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EAQ33303.1COG0583 Transcriptional regulator. (295 aa)    
Predicted Functional Partners:
EAQ31330.1
Transcriptional regulator, LysR family protein; COG0583 Transcriptional regulator.
  
     0.725
EAQ33005.1
Transcriptional regulator, LysR family protein; COG0583 Transcriptional regulator.
  
     0.593
EAQ33302.1
COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
       0.537
rpoZ
DNA-directed RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
 
   0.523
EAQ31581.1
Transcriptional regulator, LysR family protein; COG0583 Transcriptional regulator.
  
     0.474
EAQ31378.1
COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit.
  
 
   0.466
EAQ31512.1
Transcriptional regulator of lysR family protein; COG0583 Transcriptional regulator.
  
     0.443
EAQ33297.1
Probable transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
  
    0.400
Your Current Organism:
Idiomarina baltica
NCBI taxonomy Id: 314276
Other names: I. baltica OS145, Idiomarina baltica OS145, Idiomarina baltica str. OS145, Idiomarina baltica strain OS145
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