STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ33313.1Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein. (424 aa)    
Predicted Functional Partners:
EAQ33314.1
Hypothetical protein; COG0433 Predicted ATPase.
 
 
   0.957
EAQ30793.1
COG0090 Ribosomal protein L2.
   
 0.944
EAQ30997.1
COG0200 Ribosomal protein L15.
   
 0.939
rpsC
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
 
 0.938
rpsB
COG0052 Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
  
 0.934
EAQ31002.1
COG0522 Ribosomal protein S4 and related proteins.
   
 
 0.930
EAQ31001.1
COG0100 Ribosomal protein S11.
   
 0.921
EAQ30995.1
COG0098 Ribosomal protein S5.
   
 0.920
EAQ31376.1
COG0049 Ribosomal protein S7.
   
 0.919
rplP
50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
   
 0.917
Your Current Organism:
Idiomarina baltica
NCBI taxonomy Id: 314276
Other names: I. baltica OS145, Idiomarina baltica OS145, Idiomarina baltica str. OS145, Idiomarina baltica strain OS145
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