Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EAQ33333.1COG3078 Uncharacterized protein conserved in bacteria. (151 aa)    
Predicted Functional Partners:
EAQ33332.1
Uncharacterized conserved secreted protein; COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit.
 
     0.882
EAQ32157.1
SecY interacting protein Syd; Interacts with the SecY protein in vivo. May bind preferentially to an uncomplexed state of SecY, thus functioning either as a chelating agent for excess SecY in the cell or as a regulatory factor that negatively controls the translocase function. Belongs to the Syd family.
  
   
 0.876
cysE
COG1045 Serine acetyltransferase.
       0.818
EAQ32524.1
COG3057 Negative regulator of replication initiationR.
  
     0.773
EAQ31012.1
COG3076 Uncharacterized protein conserved in bacteria.
  
     0.773
EAQ31984.1
COG3083 Predicted hydrolase of alkaline phosphatase superfamily.
  
     0.771
EAQ31124.1
NlpI-like lipoprotein; May be involved in cell division.
  
     0.758
lptC
Uncharacterized conserved secreted protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. Belongs to the LptC family.
  
     0.757
EAQ32621.1
Transcriptional repressor protein MetJ; This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis.
  
     0.756
proQ
Putative solute/DNA competence effector; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family.
  
     0.752
Your Current Organism:
Idiomarina baltica
NCBI taxonomy Id: 314276
Other names: I. baltica OS145, Idiomarina baltica OS145, Idiomarina baltica str. OS145, Idiomarina baltica strain OS145
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