Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ31388.1COG0250 Transcription antiterminator. (165 aa)    
Predicted Functional Partners:
EAQ31383.1
COG0080 Ribosomal protein L11.
  
 
 0.980
EAQ30992.1
COG0096 Ribosomal protein S8.
  
 
 0.979
EAQ30993.1
COG0097 Ribosomal protein L6P/L9E.
  
 
 0.979
rpsC
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
  
 
 0.978
rplN
Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
  
 
 0.978
EAQ31376.1
COG0049 Ribosomal protein S7.
  
 
 0.977
EAQ31379.1
COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit.
  
 
 0.977
EAQ30791.1
COG0088 Ribosomal protein L4.
  
 
 0.977
EAQ31381.1
COG0244 Ribosomal protein L10.
  
 
 0.976
EAQ30975.1
COG0185 Ribosomal protein S19.
  
 
 0.976
Your Current Organism:
Idiomarina baltica
NCBI taxonomy Id: 314276
Other names: I. baltica OS145, Idiomarina baltica OS145, Idiomarina baltica str. OS145, Idiomarina baltica strain OS145
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