EAQ31404.1 protein (Idiomarina baltica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EAQ31404.1

Type II secretory pathway, component PulN. (245 aa)

Predicted Functional Partners:

gspC

0.965

EAQ31406.1

0.956

EAQ31405.1

0.942

EAQ31410.1

0.917

EAQ31409.1

0.911

EAQ31408.1

0.896

gspD

0.878

EAQ31407.1

0.874

EAQ31411.1

0.831

EAQ31413.1

0.788

Your Current Organism:

Idiomarina baltica

NCBI taxonomy Id: 314276
Other names: I. baltica OS145, Idiomarina baltica OS145, Idiomarina baltica str. OS145, Idiomarina baltica strain OS145

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EAQ31404.1	EAQ31405.1	OS145_04765	OS145_04770	Type II secretory pathway, component PulN.	COG3149 Type II secretory pathway, component PulM.	0.942
EAQ31404.1	EAQ31406.1	OS145_04765	OS145_04775	Type II secretory pathway, component PulN.	COG3297 Type II secretory pathway, component PulL.	0.956
EAQ31404.1	EAQ31407.1	OS145_04765	OS145_04780	Type II secretory pathway, component PulN.	COG3156 Type II secretory pathway, component PulK.	0.874
EAQ31404.1	EAQ31408.1	OS145_04765	OS145_04785	Type II secretory pathway, component PulN.	COG4795 Type II secretory pathway, component PulJ.	0.896
EAQ31404.1	EAQ31409.1	OS145_04765	OS145_04790	Type II secretory pathway, component PulN.	COG2165 Type II secretory pathway, pseudopilin PulG.	0.911
EAQ31404.1	EAQ31410.1	OS145_04765	OS145_04795	Type II secretory pathway, component PulN.	COG2165 Type II secretory pathway, pseudopilin PulG.	0.917
EAQ31404.1	EAQ31411.1	OS145_04765	OS145_04800	Type II secretory pathway, component PulN.	COG2165 Type II secretory pathway, pseudopilin PulG.	0.831
EAQ31404.1	EAQ31413.1	OS145_04765	OS145_04810	Type II secretory pathway, component PulN.	COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.	0.788
EAQ31404.1	gspC	OS145_04765	OS145_04820	Type II secretory pathway, component PulN.	COG3031 Type II secretory pathway, component PulC.	0.965
EAQ31404.1	gspD	OS145_04765	OS145_04815	Type II secretory pathway, component PulN.	COG1450 Type II secretory pathway, component PulD.	0.878
EAQ31405.1	EAQ31404.1	OS145_04770	OS145_04765	COG3149 Type II secretory pathway, component PulM.	Type II secretory pathway, component PulN.	0.942
EAQ31405.1	EAQ31406.1	OS145_04770	OS145_04775	COG3149 Type II secretory pathway, component PulM.	COG3297 Type II secretory pathway, component PulL.	0.986
EAQ31405.1	EAQ31407.1	OS145_04770	OS145_04780	COG3149 Type II secretory pathway, component PulM.	COG3156 Type II secretory pathway, component PulK.	0.911
EAQ31405.1	EAQ31408.1	OS145_04770	OS145_04785	COG3149 Type II secretory pathway, component PulM.	COG4795 Type II secretory pathway, component PulJ.	0.936
EAQ31405.1	EAQ31409.1	OS145_04770	OS145_04790	COG3149 Type II secretory pathway, component PulM.	COG2165 Type II secretory pathway, pseudopilin PulG.	0.937
EAQ31405.1	EAQ31410.1	OS145_04770	OS145_04795	COG3149 Type II secretory pathway, component PulM.	COG2165 Type II secretory pathway, pseudopilin PulG.	0.926
EAQ31405.1	EAQ31411.1	OS145_04770	OS145_04800	COG3149 Type II secretory pathway, component PulM.	COG2165 Type II secretory pathway, pseudopilin PulG.	0.868
EAQ31405.1	EAQ31413.1	OS145_04770	OS145_04810	COG3149 Type II secretory pathway, component PulM.	COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.	0.803
EAQ31405.1	gspC	OS145_04770	OS145_04820	COG3149 Type II secretory pathway, component PulM.	COG3031 Type II secretory pathway, component PulC.	0.963
EAQ31405.1	gspD	OS145_04770	OS145_04815	COG3149 Type II secretory pathway, component PulM.	COG1450 Type II secretory pathway, component PulD.	0.928