Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gspCCOG3031 Type II secretory pathway, component PulC. (268 aa)    
Predicted Functional Partners:
gspD
COG1450 Type II secretory pathway, component PulD.
 
 
 0.997
EAQ31408.1
COG4795 Type II secretory pathway, component PulJ.
 
  
 0.981
EAQ31406.1
COG3297 Type II secretory pathway, component PulL.
 
   
 0.980
EAQ31409.1
COG2165 Type II secretory pathway, pseudopilin PulG.
 
  
 0.979
EAQ31407.1
COG3156 Type II secretory pathway, component PulK.
 
  
 0.974
EAQ31410.1
COG2165 Type II secretory pathway, pseudopilin PulG.
 
  
 0.973
EAQ31411.1
COG2165 Type II secretory pathway, pseudopilin PulG.
 
  
 0.970
EAQ31404.1
Type II secretory pathway, component PulN.
 
   
 0.965
EAQ31405.1
COG3149 Type II secretory pathway, component PulM.
 
   
 0.963
EAQ31412.1
COG1459 Type II secretory pathway, component PulF.
 
  
 0.893
Your Current Organism:
Idiomarina baltica
NCBI taxonomy Id: 314276
Other names: I. baltica OS145, Idiomarina baltica OS145, Idiomarina baltica str. OS145, Idiomarina baltica strain OS145
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