STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ31586.1COG3121 P pilus assembly protein, chaperone PapD. (234 aa)    
Predicted Functional Partners:
EAQ31585.1
COG3188 P pilus assembly protein, porin PapC.
 
 0.999
EAQ31584.1
Hypothetical protein.
  
 0.969
EAQ31583.1
Hypothetical protein.
       0.773
EAQ31587.1
Hypothetical protein.
       0.568
EAQ31258.1
General secretion pathway protein B.
   
  
 0.528
EAQ31805.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.417
EAQ32767.1
Secreted subtilisin-like peptidase; COG1404 Subtilisin-like serine proteases.
  
    0.406
Your Current Organism:
Idiomarina baltica
NCBI taxonomy Id: 314276
Other names: I. baltica OS145, Idiomarina baltica OS145, Idiomarina baltica str. OS145, Idiomarina baltica strain OS145
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.