Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ31301.1COG0116 Predicted N6-adenine-specific DNA methylase. (709 aa)    
Predicted Functional Partners:
EAQ31299.1
COG0488 ATPase components of ABC transporters with duplicated ATPase domains.
  
  
 0.858
EAQ31298.1
COG5563 Predicted integral membrane proteins containing uncharacterized repeats.
  
    0.848
EAQ31300.1
Thioredoxin related protein; COG0526 Thiol-disulfide isomerase and thioredoxins.
       0.834
tgt
tRNA-guanine transglycosylase; COG0343 Queuine/archaeosine tRNA-ribosyltransferase.
  
  
 0.721
uppS
Undecaprenyl pyrophosphate synthase; Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with (2E,6E)-farnesyl diphosphate (E,E-FPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30Z,34E,38E)-undecaprenyl diphosphate (di- trans,octa-cis-UPP). UPP is the precursor of glycosyl carrier lipid in the biosynthesis of bacterial cell wall polysaccharide components such as peptidoglycan and lipopolysaccharide.
   
    0.686
ribD
Riboflavin-specific deaminase/reductase; COG0117 Pyrimidine deaminase.
     
 0.639
EAQ31671.1
COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; Belongs to the pseudouridine synthase RsuA family.
  
 
 0.630
EAQ31233.1
COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; Belongs to the pseudouridine synthase RsuA family.
  
 
 0.629
rmf
Ribosome modulation factor; During stationary phase, converts 70S ribosomes to an inactive dimeric form (100S ribosomes); Belongs to the ribosome modulation factor family.
       0.627
EAQ30851.1
COG2198 FOG: HPt domain.
     
 0.625
Your Current Organism:
Idiomarina baltica
NCBI taxonomy Id: 314276
Other names: I. baltica OS145, Idiomarina baltica OS145, Idiomarina baltica str. OS145, Idiomarina baltica strain OS145
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