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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpoECOG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (192 aa)    
Predicted Functional Partners:
EAQ31162.1
COG3073 Negative regulator of sigma E activity.
  
 
 0.988
EAQ31161.1
COG3026 Negative regulator of sigma E activity.
 
 
 0.917
EAQ31378.1
COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit.
    
 
 0.826
EAQ31379.1
COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit.
    
 
 0.789
EAQ31160.1
COG3086 Positive regulator of sigma E activity.
  
  
 0.772
recO
Recombinational DNA repair protein, RecO, RecF pathway; Involved in DNA repair and RecF pathway recombination.
 
     0.724
EAQ31164.1
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
       0.723
EAQ32430.1
Transcription negative regulator ChrR; COG3806 Anti-sigma factor.
  
 
 0.667
EAQ31003.1
COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit.
    
 
 0.650
rpoZ
DNA-directed RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 
 0.649
Your Current Organism:
Idiomarina baltica
NCBI taxonomy Id: 314276
Other names: I. baltica OS145, Idiomarina baltica OS145, Idiomarina baltica str. OS145, Idiomarina baltica strain OS145
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