STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ32214.1WD40 repeats containg secreted protein; COG2319 FOG: WD40 repeat. (333 aa)    
Predicted Functional Partners:
EAQ31989.1
COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing.
    
 0.991
EAQ31675.1
COG0013 Alanyl-tRNA synthetase.
   
 0.986
EAQ32409.1
COG2303 Choline dehydrogenase and related flavoproteins.
    
 0.979
EAQ31987.1
Putative protein phosphatase with Diacylglycerol kinase domain; COG0671 Membrane-associated phospholipid phosphatase.
  
 0.969
gpmI
Phosphoglyceromutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
    
 0.965
EAQ32354.1
COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases.
   
 0.961
flgM
COG2747 Negative regulator of flagellin synthesis (anti-sigma28 factor).
 
 
 0.935
rapA
Probable ATP-dependent RNA helicase HepA; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily.
   
 0.913
EAQ31379.1
COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit.
   
 0.893
rpoZ
DNA-directed RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
  0.888
Your Current Organism:
Idiomarina baltica
NCBI taxonomy Id: 314276
Other names: I. baltica OS145, Idiomarina baltica OS145, Idiomarina baltica str. OS145, Idiomarina baltica strain OS145
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.