Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
recGDNA helicase RecJ; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. (691 aa)    
Predicted Functional Partners:
trmH
rRNA methylase SpoU; Catalyzes the 2'-O methylation of guanosine at position 18 in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
  
  
 0.856
EAQ32270.1
Acetyltransferase domain (GNAT family) fused to predicted amidohydrolase (nitrilase family); COG0388 Predicted amidohydrolase.
  
    0.780
recQ
COG0514 Superfamily II DNA helicase.
   
  
 0.714
EAQ32266.1
COG3165 Uncharacterized protein conserved in bacteria.
 
     0.706
EAQ33338.1
DNA polymerase I; COG0258 5'-3' exonuclease (including N-terminal domain of PolI).
 
   
 0.701
EAQ32267.1
COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis.
     
 0.698
recJ
RecJ; COG0608 Single-stranded DNA-specific exonuclease.
 
   
 0.665
EAQ32265.1
COG0661 Predicted unusual protein kinase.
       0.664
EAQ33360.1
COG1195 Recombinational DNA repair ATPase (RecF pathway).
  
  
 0.661
EAQ31196.1
ATPase involved in DNA repair, RecN; May be involved in recombinational repair of damaged DNA.
  
  
 0.653
Your Current Organism:
Idiomarina baltica
NCBI taxonomy Id: 314276
Other names: I. baltica OS145, Idiomarina baltica OS145, Idiomarina baltica str. OS145, Idiomarina baltica strain OS145
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