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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
recGDNA helicase RecJ; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. (691 aa)    
Predicted Functional Partners:
trmH
rRNA methylase SpoU; Catalyzes the 2'-O methylation of guanosine at position 18 in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
  
  
 0.860
EAQ32270.1
Acetyltransferase domain (GNAT family) fused to predicted amidohydrolase (nitrilase family); COG0388 Predicted amidohydrolase.
  
    0.782
EAQ32266.1
COG3165 Uncharacterized protein conserved in bacteria.
 
     0.710
EAQ32265.1
COG0661 Predicted unusual protein kinase.
       0.669
EAQ32267.1
COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis.
       0.669
EAQ33338.1
DNA polymerase I; COG0258 5'-3' exonuclease (including N-terminal domain of PolI).
 
   
 0.634
EAQ32264.1
Putative TatA protein; COG1826 Sec-independent protein secretion pathway components.
       0.623
EAQ32262.1
COG0805 Sec-independent protein secretion pathway component TatC.
       0.615
EAQ32260.1
Signaling protein with a acyltransferase and GGDEF domains; COG2199 FOG: GGDEF domain.
     
 0.613
EAQ32263.1
COG1826 Sec-independent protein secretion pathway components.
       0.612
Your Current Organism:
Idiomarina baltica
NCBI taxonomy Id: 314276
Other names: I. baltica OS145, Idiomarina baltica OS145, Idiomarina baltica str. OS145, Idiomarina baltica strain OS145
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.