STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ32627.1COG4796 Type II secretory pathway, component HofQ. (404 aa)    
Predicted Functional Partners:
EAQ31358.1
Type II secretory pathway component.
  
 
 0.942
gspD
COG1450 Type II secretory pathway, component PulD.
 
  
0.790
EAQ31359.1
Type II secretory pathway component; COG4972 Tfp pilus assembly protein, ATPase PilM.
  
 
 0.784
EAQ31267.1
PilT; COG2805 Tfp pilus assembly protein, pilus retraction ATPase PilT.
 
   
 0.742
EAQ31602.1
Type II pili prepilin peptidase PilD/XcpA; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.742
EAQ31412.1
COG1459 Type II secretory pathway, component PulF.
 
 
 
 0.721
EAQ31601.1
COG1459 Type II secretory pathway, component PulF.
 
 
 
 0.714
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
     
 0.703
EAQ31413.1
COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
 
 
 
 0.701
EAQ32623.1
Peptidoglycan synthetase; COG5009 Membrane carboxypeptidase/penicillin-binding protein.
 
   
 0.689
Your Current Organism:
Idiomarina baltica
NCBI taxonomy Id: 314276
Other names: I. baltica OS145, Idiomarina baltica OS145, Idiomarina baltica str. OS145, Idiomarina baltica strain OS145
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.