Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ32649.1COG1330 Exonuclease V gamma subunit. (1150 aa)    
Predicted Functional Partners:
recB
COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains).
 
 
 0.998
recD
ATP-dependent exoDNAse (exonuclease V), alpha subunit, superfamily I helicase; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDN [...]
 
 
 0.997
EAQ33338.1
DNA polymerase I; COG0258 5'-3' exonuclease (including N-terminal domain of PolI).
   
  
 0.575
EAQ32408.1
COG2925 Exonuclease I.
  
   
 0.553
EAQ32646.1
Serine/threonine kinase with two-component sensor domain; COG2199 FOG: GGDEF domain.
       0.536
recA
COG0468 RecA/RadA recombinase.
      
 0.532
EAQ33360.1
COG1195 Recombinational DNA repair ATPase (RecF pathway).
      
 0.529
recJ
RecJ; COG0608 Single-stranded DNA-specific exonuclease.
      
 0.523
uvrC
COG0322 Nuclease subunit of the excinuclease complex.
      
 0.508
EAQ32650.1
Intracellular signaling protein (GAF,GGDEF domains); COG2199 FOG: GGDEF domain.
       0.508
Your Current Organism:
Idiomarina baltica
NCBI taxonomy Id: 314276
Other names: I. baltica OS145, Idiomarina baltica OS145, Idiomarina baltica str. OS145, Idiomarina baltica strain OS145
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