Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
rarDConserved membrane protein RarD; COG2962 Predicted permeases. (309 aa)    
Predicted Functional Partners:
EAQ32667.1
Thioesterase (4HBT) superfamily enzyme; COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism.
  
    0.809
recQ
COG0514 Superfamily II DNA helicase.
       0.626
EAQ32664.1
Signaling protein; COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
       0.546
EAQ32665.1
Hypothetical protein.
       0.523
cysZ
Putative sulfate transport protein CysZ; High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway; Belongs to the CysZ family.
      
 0.420
Your Current Organism:
Idiomarina baltica
NCBI taxonomy Id: 314276
Other names: I. baltica OS145, Idiomarina baltica OS145, Idiomarina baltica str. OS145, Idiomarina baltica strain OS145
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