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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ30790.1COG0087 Ribosomal protein L3. (212 aa)    
Predicted Functional Partners:
EAQ31381.1
COG0244 Ribosomal protein L10.
  
 0.999
EAQ31383.1
COG0080 Ribosomal protein L11.
 
 0.999
EAQ30789.1
COG0051 Ribosomal protein S10.
 
 
 0.999
EAQ30791.1
COG0088 Ribosomal protein L4.
 
 0.999
EAQ30792.1
COG0089 Ribosomal protein L23.
 
 0.999
EAQ30793.1
COG0090 Ribosomal protein L2.
 
 0.999
EAQ30975.1
COG0185 Ribosomal protein S19.
 
 
 0.999
EAQ30976.1
COG0091 Ribosomal protein L22.
 
 0.999
rplP
50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
 
 0.999
rpmC
COG0255 Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
  
 0.999
Your Current Organism:
Idiomarina baltica
NCBI taxonomy Id: 314276
Other names: I. baltica OS145, Idiomarina baltica OS145, Idiomarina baltica str. OS145, Idiomarina baltica strain OS145
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.