Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
radAATP-dependent serine protease; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (454 aa)    
Predicted Functional Partners:
recX
OraA; Modulates RecA activity; Belongs to the RecX family.
 
  
 0.933
recA
COG0468 RecA/RadA recombinase.
   
  
 0.921
EAQ31446.1
Hypothetical protein; COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component.
  
    0.818
EAQ31447.1
Iron compound ABC transporter, permease protein; COG0609 ABC-type Fe3+-siderophore transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
       0.773
EAQ31448.1
Iron ABC transporter, ATP-binding protein; COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components.
       0.773
EAQ33338.1
DNA polymerase I; COG0258 5'-3' exonuclease (including N-terminal domain of PolI).
 
   
 0.729
EAQ31196.1
ATPase involved in DNA repair, RecN; May be involved in recombinational repair of damaged DNA.
  
   
 0.713
EAQ31444.1
Hypothetical protein.
       0.659
recJ
RecJ; COG0608 Single-stranded DNA-specific exonuclease.
 
  
 0.650
uvrC
COG0322 Nuclease subunit of the excinuclease complex.
  
  
 0.626
Your Current Organism:
Idiomarina baltica
NCBI taxonomy Id: 314276
Other names: I. baltica OS145, Idiomarina baltica OS145, Idiomarina baltica str. OS145, Idiomarina baltica strain OS145
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