Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ31453.1COG0108 3,4-dihydroxy-2-butanone 4-phosphate synthase. (372 aa)    
Predicted Functional Partners:
EAQ32440.1
COG0307 Riboflavin synthase alpha chain.
 0.999
ribH
Riboflavin synthase beta chain; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin; Belongs to the DMRL synthase family.
 
 
 0.999
ribD
Riboflavin-specific deaminase/reductase; COG0117 Pyrimidine deaminase.
 0.999
EAQ31399.1
COG0516 IMP dehydrogenase/GMP reductase.
  
 
 0.956
EAQ30851.1
COG2198 FOG: HPt domain.
   
 0.951
EAQ30963.1
COG0591 Na+/proline symporter.
  
 0.950
EAQ33057.1
PAS domain-containing protein; COG0591 Na+/proline symporter.
  
 0.950
EAQ32322.1
COG0515 Serine/threonine protein kinase.
  
 
 0.950
EAQ32646.1
Serine/threonine kinase with two-component sensor domain; COG2199 FOG: GGDEF domain.
  
 
 0.950
EAQ32499.1
Hybrid sensor histidine kinase; COG2202 FOG: PAS/PAC domain.
    
 0.947
Your Current Organism:
Idiomarina baltica
NCBI taxonomy Id: 314276
Other names: I. baltica OS145, Idiomarina baltica OS145, Idiomarina baltica str. OS145, Idiomarina baltica strain OS145
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