Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ31460.1Histone deacetylase/AcuC/AphA family protein; COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein. (302 aa)    
Predicted Functional Partners:
EAQ32214.1
WD40 repeats containg secreted protein; COG2319 FOG: WD40 repeat.
  
 
  0.832
EAQ31461.1
COG3923 Primosomal replication protein N''.
       0.830
rapA
Probable ATP-dependent RNA helicase HepA; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily.
    
 0.793
EAQ31426.1
COG0105 Nucleoside diphosphate kinase.
    
   0.744
EAQ32951.1
Uncharacterized conserved membrane protein.
    
  0.731
EAQ32289.1
Hypothetical protein.
    
  0.731
dnaK
COG0443 Molecular chaperone.
    
 0.720
atpD
COG0055 F0F1-type ATP synthase, beta subunit.
    
 0.706
EAQ31456.1
Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family protein; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
  0.698
EAQ30819.1
Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family protein; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
  0.698
Your Current Organism:
Idiomarina baltica
NCBI taxonomy Id: 314276
Other names: I. baltica OS145, Idiomarina baltica OS145, Idiomarina baltica str. OS145, Idiomarina baltica strain OS145
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