Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
trpBCOG0133 Tryptophan synthase beta chain. (398 aa)    
Predicted Functional Partners:
EAQ31658.1
COG0159 Tryptophan synthase alpha chain.
 0.999
trpC
Bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; COG0134 Indole-3-glycerol phosphate synthase; Belongs to the TrpC family.
 
 0.999
trpD
Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).
 
 
 0.998
EAQ31662.1
COG0512 Anthranilate/para-aminobenzoate synthases component II.
 
 
 0.992
EAQ31663.1
COG0147 Anthranilate/para-aminobenzoate synthases component I.
 
  
 0.992
pabB
COG0147 Anthranilate/para-aminobenzoate synthases component I.
 
  
 0.952
EAQ32224.1
COG0512 Anthranilate/para-aminobenzoate synthases component II.
 
 
 0.951
EAQ33179.1
COG1171 Threonine dehydratase.
  
 0.941
EAQ31450.1
COG0112 Glycine/serine hydroxymethyltransferase.
     
 0.922
EAQ33183.1
COG0031 Cysteine synthase.
     
  0.905
Your Current Organism:
Idiomarina baltica
NCBI taxonomy Id: 314276
Other names: I. baltica OS145, Idiomarina baltica OS145, Idiomarina baltica str. OS145, Idiomarina baltica strain OS145
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