Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ31701.1Hypothetical protein; COG0023 Translation initiation factor 1 (eIF-1/SUI1) and related proteins. (111 aa)    
Predicted Functional Partners:
rpsC
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
  
   0.915
rpsQ
Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
  
   0.912
EAQ30975.1
COG0185 Ribosomal protein S19.
  
   0.883
EAQ30789.1
COG0051 Ribosomal protein S10.
   
 
 0.874
EAQ31377.1
COG0048 Ribosomal protein S12.
   
 
 0.873
rpsO
Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
   
   0.873
EAQ31000.1
COG0099 Ribosomal protein S13.
  
   0.872
EAQ31376.1
COG0049 Ribosomal protein S7.
   
   0.860
EAQ30991.1
COG0199 Ribosomal protein S14.
  
   0.860
EAQ30992.1
COG0096 Ribosomal protein S8.
  
   0.846
Your Current Organism:
Idiomarina baltica
NCBI taxonomy Id: 314276
Other names: I. baltica OS145, Idiomarina baltica OS145, Idiomarina baltica str. OS145, Idiomarina baltica strain OS145
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