Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
EAQ31885.1Transcriptional regulator, LysR family protein; COG0583 Transcriptional regulator. (308 aa)    
Predicted Functional Partners:
EAQ31886.1
COG0500 SAM-dependent methyltransferases.
       0.764
EAQ31887.1
COG0500 SAM-dependent methyltransferases.
       0.693
EAQ31888.1
Signaling protein with a periplasmic binding domain and GGDEF domain; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
       0.458
EAQ31763.1
Transcriptional regulator, LysR family protein; COG0583 Transcriptional regulator.
  
     0.422
rpoS
DNA-directed RNA polymerase sigma 38 subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response.
  
 
 
 0.412
Your Current Organism:
Idiomarina baltica
NCBI taxonomy Id: 314276
Other names: I. baltica OS145, Idiomarina baltica OS145, Idiomarina baltica str. OS145, Idiomarina baltica strain OS145
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