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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ31045.1Type IV pilus protein, PilN; COG1450 Type II secretory pathway, component PulD; Belongs to the bacterial secretin family. (489 aa)    
Predicted Functional Partners:
gspC
COG3031 Type II secretory pathway, component PulC.
  
 
 0.922
EAQ31044.1
Hypothetical protein.
       0.856
EAQ31049.1
Hypothetical protein.
  
  
 0.787
EAQ31046.1
Hypothetical protein.
       0.773
EAQ31048.1
MSHA biogenesis protein MshE; COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
  
  
 0.772
EAQ31047.1
Hypothetical protein.
       0.723
EAQ31050.1
Hypothetical protein; COG2165 Type II secretory pathway, pseudopilin PulG.
  
    0.718
EAQ31052.1
Uncharacterized conserved membrane protein.
       0.717
EAQ31359.1
Type II secretory pathway component; COG4972 Tfp pilus assembly protein, ATPase PilM.
 
  
 0.686
EAQ31051.1
Hypothetical protein.
       0.664
Your Current Organism:
Idiomarina baltica
NCBI taxonomy Id: 314276
Other names: I. baltica OS145, Idiomarina baltica OS145, Idiomarina baltica str. OS145, Idiomarina baltica strain OS145
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.